Role of Next Generation Sequencing (NGS) in Plant Disease Management: A Review

Muhammad Saeed; Zainab  Jamil; Tayyab Shehzad; Syed Zia ul Hasan; Riffat Bibi; Safia Naureen Malik; Hafiz Matee-ur-Rehman; Raees  Ahmed

doi:10.38211/joarps.2023.04.01.61

Authors

Muhammad Saeed Department of Plant Pathology, PMAS-Arid Agriculture University, Rawalpindi, Pakistan.
Zainab Jamil Department of Plant Pathology, PMAS-Arid Agriculture University, Rawalpindi, Pakistan.
Tayyab Shehzad Department of Plant Breeding and Genetics, PMAS-Arid Agriculture University, Rawalpindi, Pakistan
Syed Zia ul Hasan Hill Fruit Research Station Sunny Bank, Murree, Pakistan.
Riffat Bibi Soil and Water Conservation Research Institute Chakwal, Pakistan.
Safia Naureen Malik Soil and Water Conservation Research Institute Chakwal, Pakistan.
Hafiz Matee-ur-Rehman Department of Plant Pathology, University of Poonch Rawalakot, Azad Jammu and Kashmir
Raees Ahmed Department of Plant Pathology University of Poonch Rawlakot, Azad jammu and Kashmir

DOI:

https://doi.org/10.38211/joarps.2023.04.01.61

Keywords:

NGS, Plant, Pathogen, Diagnonis

Abstract

A high throughput technique used to determine a part of the nucleotide sequence of an organism’s genome is called next generation sequencing (NGS). NGS has been Proven revolutionary in genomics. Clinical diagnostics, Plant diseases diagnostic and other aspects of medical are now made possible by sequencing. Techniques of NGS: there are different techniques of NGS which are being used in real life sciences i.e., Illumina sequencing, Pyrosequencing, Roche 454 sequencing and Ion torrent sequencing. All vintage methods like culturing in bacterial, fungal, and viral samples are being suppressed by next generation sequencing. The potential for random metagenomic sequencing of sick samples to find potential pathogens has surfaced with the development of next-generation high-throughput parallel sequencing technology. NGS enables highly efficient, rapid, low-cost DNA or RNA high-throughput sequencing of plant virus and viroids genomes, as well as specific small RNAs generated during infection. Although this technique is not so much familiar in the field of plant diseases. However, its widespread application in agronomic sciences will make it possible to create solutions to future food-related challenges that involve biotic stress.

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